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Quantification of Aging and Rejuvenation Interventions on the Neurogenic Niche Using Single Cell Transcriptomics- [electronic resource]
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Quantification of Aging and Rejuvenation Interventions on the Neurogenic Niche Using Single Cell Transcriptomics- [electronic resource]
자료유형  
 학위논문
Control Number  
0016934506
International Standard Book Number  
9798380484251
Dewey Decimal Classification Number  
330
Main Entry-Personal Name  
Buckley, Matthew T.
Publication, Distribution, etc. (Imprint  
[S.l.] : Stanford University., 2021
Publication, Distribution, etc. (Imprint  
Ann Arbor : ProQuest Dissertations & Theses, 2021
Physical Description  
1 online resource(132 p.)
General Note  
Source: Dissertations Abstracts International, Volume: 85-04, Section: A.
General Note  
Advisor: Engreitz, Jesse;Kundaje, Anshul;Wyss-Coray, Tony;Brunet, Anne.
Dissertation Note  
Thesis (Ph.D.)--Stanford University, 2021.
Restrictions on Access Note  
This item must not be sold to any third party vendors.
Summary, Etc.  
요약Aging is the gradual deterioration of molecular, cellular, and organismal function that occurs over a lifetime. Half of the global adult disease burden is driven by diseases with incidence rates that scale quadratically with age. Understanding and countering the many mechanisms of aging has the potential to reduce or postpone the onset of many diseases simultaneously. However, we are still early in the process of understanding aging and rejuvenating mechanisms, and the tools to achieve this are rapidly improving. In this dissertation I present the work I have undertaken to leverage recent advances in single cell transcriptomics to quantify aging and rejuvenating interventions at the cellular level. I focus on the subventricular zone of the mammalian brain which provides a window into how aging impacts neurogenesis and glial cells critical to brain function. In the second chapter I concentrate on age-associated tissue composition changes; in the third chapter I concentrate on cell type-specific effects. The primary finding I present in the second chapter is the discovery of brain infiltrating CD8+ T cells in the aged neurogenic niche. These T cells are clonally expanded and secrete interferon gamma which negatively impacts the neurogenic potential of the niche. In chapter three, I describe my work building a suite of cell type-specific transcriptomic aging clocks that accurately predict chronological and biological age. I use these clocks to quantify and compare the rejuvenating effects of heterochronic parabiosis and exercise on SVZ cell types. Doing so reveals the particularly striking transcriptomic rejuvenation that young blood exposure imparts on aged neural stem cells. Together, these chapters demonstrate the power of single cell transcriptomics and computational analysis to illuminate processes of aging and their reversal.
Subject Added Entry-Topical Term  
Sparsity.
Subject Added Entry-Topical Term  
DNA methylation.
Subject Added Entry-Topical Term  
Disease.
Subject Added Entry-Topical Term  
Brain research.
Subject Added Entry-Topical Term  
Genomes.
Subject Added Entry-Topical Term  
Epigenetics.
Subject Added Entry-Topical Term  
Ribosomal DNA.
Subject Added Entry-Topical Term  
Genomics.
Subject Added Entry-Topical Term  
Genes.
Subject Added Entry-Topical Term  
Cell cycle.
Subject Added Entry-Topical Term  
T cell receptors.
Subject Added Entry-Topical Term  
Life expectancy.
Subject Added Entry-Topical Term  
Aging.
Subject Added Entry-Topical Term  
Lymphocytes.
Subject Added Entry-Topical Term  
Antigens.
Subject Added Entry-Topical Term  
Stem cells.
Subject Added Entry-Topical Term  
Interferon.
Subject Added Entry-Topical Term  
Cell division.
Subject Added Entry-Topical Term  
Biochemistry.
Subject Added Entry-Topical Term  
Cellular biology.
Subject Added Entry-Topical Term  
Developmental biology.
Subject Added Entry-Topical Term  
Genetics.
Subject Added Entry-Topical Term  
Gerontology.
Subject Added Entry-Topical Term  
Immunology.
Subject Added Entry-Topical Term  
Neurosciences.
Subject Added Entry-Topical Term  
Pharmaceutical sciences.
Added Entry-Corporate Name  
Stanford University.
Host Item Entry  
Dissertations Abstracts International. 85-04A.
Host Item Entry  
Dissertation Abstract International
Electronic Location and Access  
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Control Number  
joongbu:643555
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