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Advances in X-Ray Scattering Interferometry and Liquid Chromatography Coupled Small Angle X-Ray Scattering Towards Exploring DNA-Protein Interactions and Bionanoengineering- [electronic resource]
Advances in X-Ray Scattering Interferometry and Liquid Chromatography Coupled Small Angle X-Ray Scattering Towards Exploring DNA-Protein Interactions and Bionanoengineering- [electronic resource]

상세정보

자료유형  
 학위논문
Control Number  
0016932368
International Standard Book Number  
9798380380980
Dewey Decimal Classification Number  
574.191
Main Entry-Personal Name  
Rosenberg, Daniel Joshua.
Publication, Distribution, etc. (Imprint  
[S.l.] : University of California, Berkeley., 2023
Publication, Distribution, etc. (Imprint  
Ann Arbor : ProQuest Dissertations & Theses, 2023
Physical Description  
1 online resource(336 p.)
General Note  
Source: Dissertations Abstracts International, Volume: 85-03, Section: B.
General Note  
Advisor: Hura, Gregory;Landry, Markita P.
Dissertation Note  
Thesis (Ph.D.)--University of California, Berkeley, 2023.
Restrictions on Access Note  
This item must not be sold to any third party vendors.
Summary, Etc.  
요약This dissertation demonstrates the development and application of advanced X-ray scattering techniques toward the exploration of DNA-protein interactions and engineering bionanotechnology. Herein I describe the development of size exclusion chromatography-coupled small-angle X-ray scattering with in-line multi-angle light scattering (SEC-SAXS-MALS) and X-ray scattering interferometry (XSI). SEC-SAXS-MALS is a high-throughput, multimodal structural biology approach with integrated purification whereas XSI leverages the interference pattern between ordered gold nanoparticles (AuNPs) to calculate discrete inter-AuNP distances, effectively turning them into molecular rulers. I demonstrate the application of these techniques in the study of the single-strand break (SSB) DNA-damage repair meiotic recombination 11 (MRE11) nuclease activity, poly(ADP-ribose) polymerase 1 (PARP-1) damage recognition, activation, and inhibition, and the dynamics of the DNA-dependent protein kinase holoenzyme DNA-PK complex. Additionally, I show the versatility of these techniques in bionanoengineering by exploring the surface adsorbed morphology and nanosensing mechanisms of DNA‐functionalized single‐walled carbon nanotubes (ssDNA‐SWCNTs), and the innovation of RuBisCO assemblies. Finally, I show how these techniques provide high-throughput capabilities that enable rapid disaster responses by characterizing the Nsp7, Nsp8, and Nsp12 complexes of SARS-CoV-2 involved in replication, and the exploration of rigid monoclonal antibodies to improve detection of the SARS-CoV-2 nucleocapsid.
Subject Added Entry-Topical Term  
Biophysics.
Subject Added Entry-Topical Term  
Molecular physics.
Subject Added Entry-Topical Term  
Bioengineering.
Index Term-Uncontrolled  
Gold nanoparticles
Index Term-Uncontrolled  
Meiotic recombination 11
Index Term-Uncontrolled  
SARS-CoV-2
Index Term-Uncontrolled  
Structural biology
Index Term-Uncontrolled  
DNA-PK complex
Index Term-Uncontrolled  
X-ray scattering interferometry
Added Entry-Corporate Name  
University of California, Berkeley Biophysics
Host Item Entry  
Dissertations Abstracts International. 85-03B.
Host Item Entry  
Dissertation Abstract International
Electronic Location and Access  
로그인을 한후 보실 수 있는 자료입니다.
Control Number  
joongbu:639602

MARC

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■020    ▼a9798380380980
■035    ▼a(MiAaPQ)AAI30491898
■040    ▼aMiAaPQ▼cMiAaPQ
■0820  ▼a574.191
■1001  ▼aRosenberg,  Daniel  Joshua.
■24510▼aAdvances  in  X-Ray  Scattering  Interferometry  and  Liquid  Chromatography  Coupled  Small  Angle  X-Ray  Scattering  Towards  Exploring  DNA-Protein  Interactions  and  Bionanoengineering▼h[electronic  resource]
■260    ▼a[S.l.]▼bUniversity  of  California,  Berkeley.  ▼c2023
■260  1▼aAnn  Arbor▼bProQuest  Dissertations  &  Theses▼c2023
■300    ▼a1  online  resource(336  p.)
■500    ▼aSource:  Dissertations  Abstracts  International,  Volume:  85-03,  Section:  B.
■500    ▼aAdvisor:  Hura,  Gregory;Landry,  Markita  P.
■5021  ▼aThesis  (Ph.D.)--University  of  California,  Berkeley,  2023.
■506    ▼aThis  item  must  not  be  sold  to  any  third  party  vendors.
■520    ▼aThis  dissertation  demonstrates  the  development  and  application  of  advanced  X-ray  scattering  techniques  toward  the  exploration  of  DNA-protein  interactions  and  engineering  bionanotechnology.  Herein  I  describe  the  development  of  size  exclusion  chromatography-coupled  small-angle  X-ray  scattering  with  in-line  multi-angle  light  scattering  (SEC-SAXS-MALS)  and  X-ray  scattering  interferometry  (XSI).  SEC-SAXS-MALS  is  a  high-throughput,  multimodal  structural  biology  approach  with  integrated  purification  whereas  XSI  leverages  the  interference  pattern  between  ordered  gold  nanoparticles  (AuNPs)  to  calculate  discrete  inter-AuNP  distances,  effectively  turning  them  into  molecular  rulers.  I  demonstrate  the  application  of  these  techniques  in  the  study  of  the  single-strand  break  (SSB)  DNA-damage  repair  meiotic  recombination  11  (MRE11)  nuclease  activity,  poly(ADP-ribose)  polymerase  1  (PARP-1)  damage  recognition,  activation,  and  inhibition,  and  the  dynamics  of  the  DNA-dependent  protein  kinase  holoenzyme  DNA-PK  complex.  Additionally,  I  show  the  versatility  of  these  techniques  in  bionanoengineering  by  exploring  the  surface  adsorbed  morphology  and  nanosensing  mechanisms  of  DNA‐functionalized  single‐walled  carbon  nanotubes  (ssDNA‐SWCNTs),  and  the  innovation  of  RuBisCO  assemblies.  Finally,  I  show  how  these  techniques  provide  high-throughput  capabilities  that  enable  rapid  disaster  responses  by  characterizing  the  Nsp7,  Nsp8,  and  Nsp12  complexes  of  SARS-CoV-2  involved  in  replication,  and  the  exploration  of  rigid  monoclonal  antibodies  to  improve  detection  of  the  SARS-CoV-2  nucleocapsid.
■590    ▼aSchool  code:  0028.
■650  4▼aBiophysics.
■650  4▼aMolecular  physics.
■650  4▼aBioengineering.
■653    ▼aGold  nanoparticles
■653    ▼aMeiotic  recombination  11
■653    ▼aSARS-CoV-2
■653    ▼aStructural  biology
■653    ▼aDNA-PK  complex
■653    ▼aX-ray  scattering  interferometry
■690    ▼a0786
■690    ▼a0609
■690    ▼a0202
■71020▼aUniversity  of  California,  Berkeley▼bBiophysics.
■7730  ▼tDissertations  Abstracts  International▼g85-03B.
■773    ▼tDissertation  Abstract  International
■790    ▼a0028
■791    ▼aPh.D.
■792    ▼a2023
■793    ▼aEnglish
■85640▼uhttp://www.riss.kr/pdu/ddodLink.do?id=T16932368▼nKERIS▼z이  자료의  원문은  한국교육학술정보원에서  제공합니다.
■980    ▼a202402▼f2024

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