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Effects of Inflammatory Conditions on the Structure of Fibrin Clots: Modeling a Flexible Protein Dimer with Molecular Dynamics Simulations
Effects of Inflammatory Conditions on the Structure of Fibrin Clots: Modeling a Flexible Protein Dimer with Molecular Dynamics Simulations
- 자료유형
- 학위논문
- Control Number
- 0015492191
- International Standard Book Number
- 9781085714648
- Dewey Decimal Classification Number
- 610
- Main Entry-Personal Name
- Pederson, Eric.
- Publication, Distribution, etc. (Imprint
- [Sl] : University of Washington, 2019
- Publication, Distribution, etc. (Imprint
- Ann Arbor : ProQuest Dissertations & Theses, 2019
- Physical Description
- 147 p
- General Note
- Source: Dissertations Abstracts International, Volume: 81-03, Section: B.
- General Note
- Advisor: Interlandi, Gianluca.
- Dissertation Note
- Thesis (Ph.D.)--University of Washington, 2019.
- Restrictions on Access Note
- This item must not be sold to any third party vendors.
- Restrictions on Access Note
- This item must not be added to any third party search indexes.
- Summary, Etc.
- 요약Upon vascular injury, fibrin is converted from fibrinogen and polymerizes to form long protofibrils. Protofibrils laterally aggregate via the 慣C domain to form fibrin fibers, which bind to platelets and form a clot. Inflammation recruits pro-inflammatory neutrophils to the site of injury, which produce HOCl via myeloperoxidase. Inflammation is associated with abnormal clot morphologies, which can lead to thrombosis and bleeding. Fibrin Met476, located in the 慣C domain, oxidizes upon exposure to myeloperoxidase-derived HOCl, which subsequently disrupts lateral aggregation and produces abnormal clots. The mechanism by which oxidation affects 慣C domain structure, dynamics and self-association was investigated by enhanced-sampling molecular dynamics techniques and free energy calculations. Replica exchange molecular dynamics simulations with an implicit solvent were used to efficiently sample 慣C-domain dimer conformations. Low-energy conformers were identified from the free energy landscape minima and were used for free energy calculations after equilibra- tion in explicit solvent. Using this method, I propose the hydrophobic core model of 慣C polymerization, which states that Met476 is a docking spot for 慣C polymerization.
- Subject Added Entry-Topical Term
- Biochemistry
- Subject Added Entry-Topical Term
- Biophysics
- Subject Added Entry-Topical Term
- Bioengineering
- Added Entry-Corporate Name
- University of Washington Bioengineering
- Host Item Entry
- Dissertations Abstracts International. 81-03B.
- Host Item Entry
- Dissertation Abstract International
- Electronic Location and Access
- 로그인을 한후 보실 수 있는 자료입니다.
- Control Number
- joongbu:565582
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