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Effects of Inflammatory Conditions on the Structure of Fibrin Clots: Modeling a Flexible Protein Dimer with Molecular Dynamics Simulations
Содержание
Effects of Inflammatory Conditions on the Structure of Fibrin Clots: Modeling a Flexible Protein Dimer with Molecular Dynamics Simulations
자료유형  
 학위논문
Control Number  
0015492191
International Standard Book Number  
9781085714648
Dewey Decimal Classification Number  
610
Main Entry-Personal Name  
Pederson, Eric.
Publication, Distribution, etc. (Imprint  
[Sl] : University of Washington, 2019
Publication, Distribution, etc. (Imprint  
Ann Arbor : ProQuest Dissertations & Theses, 2019
Physical Description  
147 p
General Note  
Source: Dissertations Abstracts International, Volume: 81-03, Section: B.
General Note  
Advisor: Interlandi, Gianluca.
Dissertation Note  
Thesis (Ph.D.)--University of Washington, 2019.
Restrictions on Access Note  
This item must not be sold to any third party vendors.
Restrictions on Access Note  
This item must not be added to any third party search indexes.
Summary, Etc.  
요약Upon vascular injury, fibrin is converted from fibrinogen and polymerizes to form long protofibrils. Protofibrils laterally aggregate via the 慣C domain to form fibrin fibers, which bind to platelets and form a clot. Inflammation recruits pro-inflammatory neutrophils to the site of injury, which produce HOCl via myeloperoxidase. Inflammation is associated with abnormal clot morphologies, which can lead to thrombosis and bleeding. Fibrin Met476, located in the 慣C domain, oxidizes upon exposure to myeloperoxidase-derived HOCl, which subsequently disrupts lateral aggregation and produces abnormal clots. The mechanism by which oxidation affects 慣C domain structure, dynamics and self-association was investigated by enhanced-sampling molecular dynamics techniques and free energy calculations. Replica exchange molecular dynamics simulations with an implicit solvent were used to efficiently sample 慣C-domain dimer conformations. Low-energy conformers were identified from the free energy landscape minima and were used for free energy calculations after equilibra- tion in explicit solvent. Using this method, I propose the hydrophobic core model of 慣C polymerization, which states that Met476 is a docking spot for 慣C polymerization.
Subject Added Entry-Topical Term  
Biochemistry
Subject Added Entry-Topical Term  
Biophysics
Subject Added Entry-Topical Term  
Bioengineering
Added Entry-Corporate Name  
University of Washington Bioengineering
Host Item Entry  
Dissertations Abstracts International. 81-03B.
Host Item Entry  
Dissertation Abstract International
Electronic Location and Access  
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Control Number  
joongbu:565582
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